Course Modules

Flux balance analysis example with carbon economy: DAHP biosynthesis

Flux balance analysis example with carbon economy: DAHP biosynthesis
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Flux balance analysis example with carbon economy: DAHP biosynthesis 542485   true
  • Quiz
    DAHP (carbon economy) module DAHP (carbon economy) module
    Score at least 3.5 Must score at least 3.5 to complete this module item Scored at least 3.5 Module item has been completed by scoring at least 3.5 View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • Attachment
    examplenet.m examplenet.m
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • Attachment
    DAHPneterror.m DAHPneterror.m
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Flux balance analysis example with reductant economy: Lys biosynthesis

Flux balance analysis example with reductant economy: Lys biosynthesis
Prerequisites: Flux balance analysis example with carbon economy: DAHP biosynthesis
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Module Completed Module In Progress Module Locked
Flux balance analysis example with reductant economy: Lys biosynthesis 545266   true
  • Quiz
    Lysine (reductant economy) module Lysine (reductant economy) module
    Score at least 3.0 Must score at least 3.0 to complete this module item Scored at least 3.0 Module item has been completed by scoring at least 3.0 View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • Attachment
    Central carbon metabolism.pdf Central carbon metabolism.pdf
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  • Attachment
    Lys extreme pathways.xlsx Lys extreme pathways.xlsx
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Phenotype spaces and extreme pathways

Phenotype spaces and extreme pathways
Prerequisites: Flux balance analysis example with carbon economy: DAHP biosynthesis
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Module Completed Module In Progress Module Locked
Phenotype spaces and extreme pathways 545268   true
  • Quiz
    Phenotype spaces and extreme pathways module Phenotype spaces and extreme pathways module
    Score at least 3.0 Must score at least 3.0 to complete this module item Scored at least 3.0 Module item has been completed by scoring at least 3.0 View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • Attachment
    Lecture_handout_04_Extreme_pathways.pdf Lecture_handout_04_Extreme_pathways.pdf
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  • Attachment
    diamondnet.m diamondnet.m
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  • Attachment
    Extreme pathways (DC area highway network).xlsx Extreme pathways (DC area highway network).xlsx
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COBRA

COBRA
Prerequisites: Flux balance analysis example with reductant economy: Lys biosynthesis, Phenotype spaces and extreme pathways
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Module Completed Module In Progress Module Locked
COBRA 545270  
  • Context Module Sub Header

    COBRA article: Becker, S.A., Feist, A.M., Mo, M.L., Hannum, G., Palsson, B.O., Herrgard, M.J., 2007. Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox. Nat. Protocols 2, 727-738.

    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • External Url
    COBRA download page COBRA download page
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  • External Url
    COBRA documentation COBRA documentation
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  • Attachment
    DAHPsolve.m DAHPsolve.m
    Score at least 0.0 Must score at least 0.0 to complete this module item Scored at least 0.0 Module item has been completed by scoring at least 0.0 View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • Attachment
    DAHP biosynthesis (native).xls DAHP biosynthesis (native).xls
    Score at least 0.0 Must score at least 0.0 to complete this module item Scored at least 0.0 Module item has been completed by scoring at least 0.0 View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • Attachment
    DAHP biosynthesis (pps).xls DAHP biosynthesis (pps).xls
    Score at least 0.0 Must score at least 0.0 to complete this module item Scored at least 0.0 Module item has been completed by scoring at least 0.0 View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • Attachment
    DAHP biosynthesis (pyc).xls DAHP biosynthesis (pyc).xls
    Score at least 0.0 Must score at least 0.0 to complete this module item Scored at least 0.0 Module item has been completed by scoring at least 0.0 View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
 
minimum score must view must submit must contribute